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java compiler remove classes when compiling a few selected java files

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I chose a few java files or a package in the left side project explorer and compile (using CRTL+ALT+F9 for instance) . the java files are compiled. But when I run the web container, it compains java class def not found error for some totally unrelated classes which was available before the compilation.  I noticed some other classes are removed by the compile process.

 

Can somebody explain what's going on?

 

This is intelliJ 14


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